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Biophysical Principles and Methods

  • Discuss molecular driving forces in biological systems.
  • Review thermodynamics: free energy, enthalpy, and entropy.
  • Examine key methods for determining structures of biological macromolecules.
  • Examine how proteins are analyzed by mass spectrometry.

What Processes Control Body Size?

  • What is programmed cell death and what is its purpose?
  • How does the death program disassemble and dispose of a cell?
  • How is the death program regulated?

“Programmed” Cell Death or Apoptosis

  • Cell death organizes tissues and eliminates extra and injured cells
  • In apoptosis, caspases target specific proteins to disassemble the cell
  • Procaspases are cleaved to form active heterodimeric caspases
  • “Initiator” and “effector” caspases have long and short prodomains, respectively
  • PS is exposed on dying cells “Programmed” Cell Death or Apoptosis
  • “Extrinsic” pathways - receptors and DED caspases
  • “Intrinsic” pathways - cytochrome c and CARD caspases
  • Bcl2 family proteins protect or promote cytochrome c release
  • IAP family proteins inhibit caspases
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